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The following is a current list of churches in Boone County. Many of the congregations first established by pioneer settlers still serve the community today. Websites to some churches added 20 July 2015.

Church Location More Information
Augustana Lutheran Boone, IA www.augustanaboone.org
Baha'i Faith Boone, IA  
Berean Baptist Church Boone, IA bereanbaptistboone.com/bereanbaptistboone.com/Welcome.html
Bethel Church Ogden, IA bethelcma.org
Boxholm Trinity Lutheran Boone, IA  
Central Christian Boone, IA cccboone.org
Church of Jesus Christ of Latter Day Saints Boone, IA  
Cornerstone Alliance Christian Boone, IA boonecornerstone.com
Church of God of Prophecy Boone, IA  
Church of the Nazarene Boone, IA booneiowachurchofthenazarene.org
Church of the Sacred Heart Boone, IA sacredhrt.org/events.htm
Eternal Life Mission Church Luther, IA  
Evangelical Bible Church Pilot Mound, IA  
Evangelical Free Church Madrid, IA www.madridefc.com
First Assembly of God Boone, IA  
First Baptist Church Boone, IA fbcboone.com
First Church of God Madrid, IA  
First Evangelical Free Church Boone, IA  
First Presbyterian Church Boone, IA
First United Methodist Church Boone, IA www.umc.org
Garden Prairie U.C.C. Madrid, IA  
Grace Community Church Boone, IA
Grace Episcopal Boone, IA www.episcopalchurch.org/parish/grace-episcopal-church-boone-ia
Hopkins Grove Methodist Madrid, IA  
Immanuel Lutheran Ogden, IA  
Kingdom Hall of Jehovah's Witnesses Boone, IA  
Lighthouse Mission Boone, IA  
Luther Christian Madrid, IA  
Marion Street United Methodist Boone, IA  
Mackey United Methodist Boone, IA  
Open Bible Church of Boone Boone, IA  
Ogden Baptist Ogden, IA  
Ogden Church of Christ Ogden, IA  
Ogden Community United Methodist Church Ogden, IA  
Primitive Methodist Boone, IA  
Salvation Army Boone, IA  
Seventh Day Adventist Boone, IA  
St. John's Catholic Church Ogden, IA  
St. John's Lutheran Madrid, IA  
St. Malachy's Church Madrid, IA www.stmalachys-madrid.com
St. Paul's Lutheran Church Boone, IA www.stpaulboone.org
St. Paul's United Church of Christ Madrid, IA  
Trinity Lutheran Church of Boone Boone, IA www.trinitylutheranboone.com/default.aspx
United Methodist Church Boone, IA  
Waters Edge Church Ogden, IA  
Zion Lutheran Ogden, IA  
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